# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

PortSystem          1.0
PortGroup           R 1.0

R.setup             github satijalab Seurat 5.1.0 v
revision            1
maintainers         nomaintainer
license             MIT
description         Tools for Single Cell Genomics
long_description    {*}${description}
homepage            https://satijalab.org/seurat
checksums           rmd160  bf9552258aa1b7aba17dc030d8f53bd6fa981636 \
                    sha256  6171ac45a44d5c70fc1409fe9b95298fb7a45342b653620c9fa4dff19837bf30 \
                    size    3516102
github.tarball_from archive

depends_lib-append  port:R-cowplot \
                    port:R-fastDummies \
                    port:R-fitdistrplus \
                    port:R-future \
                    port:R-future.apply \
                    port:R-generics \
                    port:R-ggplot2 \
                    port:R-ggrepel \
                    port:R-ggridges \
                    port:R-httr \
                    port:R-ica \
                    port:R-igraph \
                    port:R-irlba \
                    port:R-jsonlite \
                    port:R-leiden \
                    port:R-lifecycle \
                    port:R-lmtest \
                    port:R-matrixStats \
                    port:R-miniUI \
                    port:R-patchwork \
                    port:R-pbapply \
                    port:R-plotly \
                    port:R-png \
                    port:R-progressr \
                    port:R-purrr \
                    port:R-RANN \
                    port:R-RColorBrewer \
                    port:R-Rcpp \
                    port:R-RcppAnnoy \
                    port:R-RcppEigen \
                    port:R-RcppHNSW \
                    port:R-RcppProgress \
                    port:R-reticulate \
                    port:R-rlang \
                    port:R-ROCR \
                    port:R-RSpectra \
                    port:R-Rtsne \
                    port:R-scales \
                    port:R-scattermore \
                    port:R-sctransform \
                    port:R-SeuratObject \
                    port:R-shiny \
                    port:R-spatstat.explore \
                    port:R-spatstat.geom \
                    port:R-tibble \
                    port:R-uwot

# Some optional deps are omitted.
depends_test-append port:R-ape \
                    port:R-Biobase \
                    port:R-BiocGenerics \
                    port:R-data.table \
                    port:R-DelayedArray \
                    port:R-DESeq2 \
                    port:R-enrichR \
                    port:R-GenomeInfoDb \
                    port:R-GenomicRanges \
                    port:R-ggrastr \
                    port:R-harmony \
                    port:R-hdf5r \
                    port:R-IRanges \
                    port:R-limma \
                    port:R-mixtools \
                    port:R-R.utils \
                    port:R-Rfast2 \
                    port:R-rsvd \
                    port:R-rtracklayer \
                    port:R-S4Vectors \
                    port:R-SingleCellExperiment \
                    port:R-SummarizedExperiment \
                    port:R-testthat \
                    port:R-VGAM

# On PowerPC 4 tests fail [ FAIL 4 | WARN 0 | SKIP 29 | PASS 532 ]
# https://github.com/satijalab/seurat/issues/8862
test.run            yes