# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

PortSystem          1.0
PortGroup           R 1.0

R.setup             bioconductor zhengxwen SeqArray 1.44.2
revision            0
categories-append   bioconductor
maintainers         nomaintainer
license             GPL-3
description         Data management of large-scale whole-genome sequence variant calls
long_description    {*}${description}
homepage            https://github.com/zhengxwen/SeqArray
checksums           rmd160  ee6ee3ba759be9a3c23fdbc7425502652aa0b2ad \
                    sha256  5cd2c880634622b939126067bbf50e25b1746fab00b8cc484a3a32c2cbdd1054 \
                    size    3583528

depends_lib-append  port:R-Biostrings \
                    port:R-gdsfmt \
                    port:R-GenomeInfoDb \
                    port:R-GenomicRanges \
                    port:R-IRanges \
                    port:R-S4Vectors

patchfiles          patch-no-SNPRelate.diff

depends_test-append port:R-Biobase \
                    port:R-BiocGenerics \
                    port:R-BiocParallel \
                    port:R-crayon \
                    port:R-digest \
                    port:R-knitr \
                    port:R-markdown \
                    port:R-Rcpp \
                    port:R-rmarkdown \
                    port:R-Rsamtools \
                    port:R-RUnit \
                    port:R-VariantAnnotation

test.run            yes